Hi,
I have problems loading the repeatmasker track from UCSC into R. I try to use the makeFeatureDbFromUCSC function from the GenomicFeatures package. The R code and the corresponding error message is below.
Am I doing something wrong, or is there a problem with the track?
Thank you very much!
input:
library(GenomicFeatures)
repdb <- makeFeatureDbFromUCSC(genome= "hg19", track="rmsk", table="rmsk", chromCol="genoName", chromStartCol="genoStart", chromEndCol="genoEnd")
output:
Download the rmsk table ...
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 3606345 did not have 17 elements
I have problems loading the repeatmasker track from UCSC into R. I try to use the makeFeatureDbFromUCSC function from the GenomicFeatures package. The R code and the corresponding error message is below.
Am I doing something wrong, or is there a problem with the track?
Thank you very much!
input:
library(GenomicFeatures)
repdb <- makeFeatureDbFromUCSC(genome= "hg19", track="rmsk", table="rmsk", chromCol="genoName", chromStartCol="genoStart", chromEndCol="genoEnd")
output:
Download the rmsk table ...
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 3606345 did not have 17 elements
