Hello from beautiful Santa Cruz, CA!
I am interested in identifying variable expression levels as well as sequence polymorphism between...
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RNA-seq: Expression levels and polymorphisms
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What databases are available for RNA-seq datasets?
Currently, I'm looking into the Gene Expression Omnibus. Are there any other good websites that curate RNA-seq data (or perhaps provide links to where...
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RNA-seq providers offering Tag profiling?
Hello
I am looking for a service provider that offers RNA-sequencing (preferably Illumina) using tag profiling (i.e. single read per transcript)....
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cufflinks no FPKM values due to gtf issue
Hi,
I am facing an issue with getting cufflinks results with Arabidopsis. The problem seems to be the reference gtf.
When...
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SeqSolve: the new NGS software solution for RNA-seq data profiling, from Integromics
Hi all,
Integromics has released SeqSolve™, a new software for tertiary analysis of NGS data, currently focused on RNA-seq, with ChIP-Seq/Re-Seq...
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How to decide FPKM fo known genes
Hi , everyone.
I am wondering how I should determin the FPKM of reference genes.
I can get FPKM of cufflinks predicted transcript...
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Differential gene expression of gene clusters
Hi
I am analyzing RNA-Seq data. I have RPKM values for all the genes. The data set contains 7 samples. I am looking into genes associated...