Hi All!
I am trying to use MOSAIK to run an alignment of paired end reads sequenced with Illumina HiSeq. I notice that there are two ways...
29 results in 0.0077 seconds.
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MosaikAligner:Segmentation Fault
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STAR segmentation fault (--genomeSAindexNbases not reassigning?)
Hello!
I have used STAR successfully in the past to align with large reference genomes. I am now trying to align with a small genome (~3230... -
Segmentation Fault 11, cuffdiff 2.2.1
I used homebrew to download cufflinks 2.2.1 and the related packages to replicate the Cole-Trapnell paper from 2012 and have run into an issue on step... -
bwa mem segmentation fault aligning 454 reads alignment to reference sequences
Hi!
I need to align 454 reads to a set of 17 reference sequences.
I thought to use bra with the men algorithm.
I built the... -
Segmentation fault (core dumped) in Velvet
Hi all,
I am using MiSeq paired end data which I recived from our sequencing facility, this data had already been cleaned using sythe and... -
cufflinks segmentation fault and taking very long to run
I have run cuff merge with Cufflinks 2.2.0 and I used my merged.gtf file to run cuffdiff ( you can see the command I used at the end of the email). However,... -
Bwa mem is exiting with segmentation fault for large contigs (> 0.4Mbp)
Hello all,
I am using bwa mem to align contigs to a reference genome and I observed that it is exiting with an error message "Segmentation... -
samtools view segmentation fault
Hi all,
I am trying to convert a sorted .bam file back into a .sam file for downstream programs
but when I run the command: ... -
PeakSeq peakselect segmentation fault
Hi,
I'm trying to use PeakSeq v1.1 to call peaks on Illumina reads. I used the preprocess option to process both my Input and Experiment... -
BWA error
I am trying to map a read to hg19 using BWA(0.7.4-r385).it's show "Segmentation fault",but I cut the read to two sequences,then it's normally.... -
About Segfault in samtools
Hi all,
I encounted a question about segmentation fault when I used the tool of samtools(command:faidx). I checked the resourse with the command... -
exonerate Segmentation Fault on Red Hat Enterprise Linux Server release 6.4
I compiled exonerate-2.2.0 on two different machines:
1) CentOS release 5.8 (Final)
2) Red Hat Enterprise Linux Server release 6.4 (Santiago)... -
mpileup on 300 BAM files
I have seen similar posts on this forum, but I continue getting "segmentation fault" every time I start mpileup on my BAM files. I have about...Last edited by tejajo; 07-08-2013, 02:33 AM. -
Samtools bam sort and index errors
I'm having issues with the sorting/indexing of a bam file. I just started working with samtools (and all bioinformatics) last week so I'm pretty new... -
Chromosomal notation and Segmentation fault
Hi all,
I have a bam file with chromosomal notation 1,2.... and i need it to be as chr1,chr2.....
For this i have tried,...
