Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • wskwxf
    Junior Member
    • Oct 2012
    • 6

    #1

    BWA error

    I am trying to map a read to hg19 using BWA(0.7.4-r385).it's show "Segmentation fault",but I cut the read to two sequences,then it's normally.
    Read:
    @HWI-ST1066:139:H157AADXX:1:2111:13586:46539 2:N:0:GATAGACA
    CCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATGGATCATAGG
    +
    00<<BBBBBBBBBB<BBBBBBBBBBBBB<BBB7<07<<BBBBB<<<<<<<<<<<77<0<0<7<7<0<'''00
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Is this a real or a virtual server? What OS are you using? Did you compile the program (and build the indexes) yourself on this machine? Amount of memory?

    Comment

    • wskwxf
      Junior Member
      • Oct 2012
      • 6

      #3
      it's a real,use centos,and compile the program myself.Now,the problem is solved,but that use bwa v0.6.2, I thinks that problem is new version(bwa-0.7.5) bug.

      Comment

      • winsettz
        Member
        • Sep 2012
        • 91

        #4
        0.75 or 0.75a?

        Also, bwa sampe or bwa mem?

        Comment

        • wskwxf
          Junior Member
          • Oct 2012
          • 6

          #5
          Originally posted by winsettz View Post
          0.75 or 0.75a?

          Also, bwa sampe or bwa mem?
          I have tested the two versions,used bwa sampe

          Comment

          Latest Articles

          Collapse

          • kinpict.com
            Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
            by kinpict.com
            The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
            Today, 06:37 PM
          • SEQadmin2
            16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
            by SEQadmin2





            NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
            10-30-2026, 06:46 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, 11-12-2026, 07:59 AM
          0 responses
          26 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 11-05-2026, 09:25 AM
          0 responses
          35 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 11-03-2026, 11:54 AM
          2 responses
          56 views
          0 reactions
          Last Post kinpict.com  
          Started by SEQadmin2, 10-28-2026, 09:57 AM
          0 responses
          175 views
          0 reactions
          Last Post SEQadmin2  
          Working...