I have run cuff merge with Cufflinks 2.2.0 and I used my merged.gtf file to run cuffdiff ( you can see the command I used at the end of the email). However, cuffdiff seemed to take extremely long time after the "Testing for differential expression and regulation in locus" step and came up with the following error:
"[18:10:49] Testing for differential expression and regulation in locus.
> Processing Locus chr1:68024242-68025896 [ ] 3%Segmentation fault (core dumped)
To get to this point it ran for over a week.
Are you familiar with this error or what can I do as an alternative? I have tried running it twice and both times it comes with this error.
Your input is very appreciated!!!!
Thank you!
Dessi
"[18:10:49] Testing for differential expression and regulation in locus.
> Processing Locus chr1:68024242-68025896 [ ] 3%Segmentation fault (core dumped)
To get to this point it ran for over a week.
Are you familiar with this error or what can I do as an alternative? I have tried running it twice and both times it comes with this error.
Your input is very appreciated!!!!
Thank you!
Dessi
Comment