hello
i am going to identify Differentially methylated regions (DMRs) using SeqMonk. as you know i can use different file format as my...
9 results in 0.0027 seconds.
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best input file format for SeqMonk
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SeqMonk: View of Nt/Aminoacid sequence possible?
Hi,
relative Bioinformatics-noob here.
After a hint from a friend, I recently started using SeqMonk to analyse Ribosomal Profiling... -
SeqMonk and featureCounts disagree on rRNA
This is actually a follow-up from a previous problem I had described in this post.
In this experiment we've taken cultured human cells,... -
SeqMonk RNAseq QC plot error (>100 exon?)
I've just started exploring SeqMonk, just looking at human total RNA-seq data to check the distribution of different types of RNA.
However,... -
seqmonk: get probe value
Hi
I'd like to know how I can get a text file with my probe list written with all the basic info (chromosome, start, stop, value).
When... -
SeqMonk: Export features (e.g. CpG Islands) from Ensembl for import into SeqMonk?
Hello,
I am using SeqMonk to view reads mapped to a genome. I would like to import an extra annotation set (CpG Islands) to use in my... -
Mapping to transcriptome with Bowtie2-beta5
Hey guys,
I wanted to map by brand new paired-end RNA-seq data to the mouse transcriptome using the current beta (b5) of Bowtie2.
As I could... -
SeqMonk: Visualisation and analysis for large mapped data sets
[Sorry to open a new thread, but as there were a few previous SeqMonk threads I thought I'd open a new one and put everything in here from now on]... -
SeqMonk v0.10.0 released
We have just released a major update to our SeqMonk package for the analysis of large mapped sequence datasets on normal desktop PCs (or Macs). This...
