Hi,
I have a list of genes for which I would like to list the cDNA start and end (c. notation) for each of the exons in them. I already have the...
25 results in 0.0023 seconds.
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get cDNA start and end for exons in a list of genes
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Comparison of programming languages for NGS tools
We have just published a paper about comparing Go, Java, and C++ for implementing our sequencing tool elPrep in BMC Bioinformatics.
elPrep... -
Is it possible to print DNA sequences of subject organism in tblastn?
I did tblastn analysis by following command
...HTML Code:tblastn -query t3ss.fasta -subject org1.fasta -outfmt '6 qseqid qstart qend sseqid sstart send pident
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Training in Bioinformatics for Beginners @ NIH, USA, April 17-20, 2018
Bioinformatics for Beginners
April 17-20, 2018
Where?
National Institutes of Health
9000 Rockville Pike
...Last edited by aabi; 03-26-2018, 05:47 PM. -
Best program to estimate genetic distance?
I would like to estimate genetic divergence between sister taxa using HKY model. I have 22 different species (11 sister taxa pairs) and am using mitochondrial...Last edited by nikki1044; 03-06-2017, 10:00 AM. -
ATAC - sequence processing pipeline
Hi,
I'm very new to this sequence analysis.
What do people usually use for ATAC sequence analysis? Is there a user-interface type... -
Non A T G C base in RefSeq zebrafish mRNA sequence
I found some non A T C G base in refseq zebrafish mRNA sequence:
'Y', 'K', 'R', 'M', 'W'
couldn't find out what do they mean. ... -
PAN and CORE genome analysis
Hi,
I have an OTU biom file (obtained from Closed reference QIIME 1.8.0 v) contains 65 samples, I am trying to do analysis for PAN/CORE genome.... -
Getting the protein Domain architecture from a domtblout
Hello Everyone
I have a million protein sequences that I ran against Pfam and now I have the corresponding domtblout files. I would like... -
A new open source tool for structural variant discovery: RAPTR-SV
Hello everyone,
We are pleased to present a new tool for Structural Variant (SV) discovery using whole-genome, paired-end sequence data:... -
Tools for identifying/verifying protein (without accession number)
If I have a series of protein sequences (experimentally obtained) that yield no results from BLAST, are there any other online/software tools that can... -
Optimal bioinformatics computer configuration (budget 2500$)
Hello,
After setting up sequencing platform in our lab, we are looking for computer to do primary analysis on retrieved data. It would... -
Computational postdoc, Regulatory Genomics, Imperial College London
We are looking for a highly motivated computational scientist to develop an research project in the area of pancreatic islet regulatory genomics and... -
Introduction
I am an undergraduate student at UNLV and am taking a Bioinformatics class. We just recently had our exomes sequenced and were given the fastq file that... -
Trying to get binned GC content in hg19
Hi,
I have a large (~2 million) set of SNPs and I would like to know the GC content +/- 500 bp from the variants. I have some Python and...
