Is there any script that I can use to find overlaps among small RNA reads (fastq file)?
I am using a python script developed by Institut...
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How to separate small RNA reads that show 10nt overlap?
Last edited by Juulluu21; 07-09-2017, 08:43 AM. -
Webinar: How one researcher analyze piRNAs from 7,000 TCGA sample
Webinar:
Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology
April... -
Hands-On NGS Bioinformatics Workshops 2016
Advance your research. Understand NGS and analyze sequenced data yourself.
microRNA Analysis
September 21 - 23, 2016
microRNA... -
Hands-On NGS Bioinformatics Workshops 2016
Advance your research. Understand NGS and analyze sequenced data yourself.
microRNA Analysis
September 21 - 23, 2016
microRNA... -
Small RNA seq degradation
Hi, in your opinion, for a small RNA seq experiment, the percentage of the reads that map on rRNA could be a "degradation index" of the library?... -
Simulation of a small RNA-seq experiment
Hi, I would like to know if it is possible to simulate a small RNA-seq dataset because I found tools only for RNA seq.
Thank you. -
small RNA seq - sRNAbench
Hi,
I have two questions concerning the analysis of a small RNA seq data set.
1. The tool I would like to use to quantify... -
Quatification of tRNA-derived RNA fragments (tRFs) ?
Hi,
In the lab we are analyzing tRNA-derived RNA fragments. My boss needs to quantify these fragments in different conditions (Presymptomatic...Last edited by diego diaz; 01-19-2015, 05:04 AM. -
Count intervals of multiply mapped reads overlapping the genome
Hi everyone,
I have some SAM/BAM files containing the alignments of small RNA-seq reads to mm9 that are created by BWA. I'm interested... -
Library quantification of Small-RNAseq
Hi!
We are doing Small-RNAseq libraries since a little bit (using TruSeq Small RNA prep kit) and we have problem quantifying the libraries accurately.... -
support files for small RNA-Seq for mouse
Hello,
Dose anyone have those files for mouse small RNA-Seq as required in the Illumina Experiment Manager -- Contaminant, RNA, and miRNA?... -
Normalization of miRNA counts across different samples using miRDeep2
I am using miRDeep2 to analyze my small RNA sequencing data. The quantifier.pl module outputs read counts and normalized read counts for miRNA within...
