Hi All,
I have a quick question. I'm doing some exome sequencing, and after all of the mapping, and annotating steps, I'm starting to go through...
9 results in 0.0021 seconds.
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How many unannotated SNPs?
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Reduce the SNP annotation time by up to 95%
Explore the new script ‘Create Targeted VAL’ in Strand NGS for creating subset of dbSNP database with target regions of interest and run...Last edited by Strandlife; 07-03-2016, 10:29 PM. -
Has anyone used kSNP?
Hi all,
I'm using kSNP to call snps in my data and generate a vcf file of the outcomes.
I have a reference genome which i have used prokka... -
What are F2 variants?
The 1000 genomes research article(http://www.nature.com/nature/journal...ture11632.html) studies f2 variants. They refer to these as "Variants... -
snpEFF Database building error
I am using snpEFF for SNP annotation. I am building my own database. I added genome entry to snpEff's configuration. I'm building the database from a... -
Some help with Variant Effect Predictor (VEP)
Hi guys,
I've run the VEP tool and got some results that don't make sense when I checked the allele used to calculate the consequence associate... -
SNPs missing in HuGE Navigator
Hi all,
I really like HuGE Navigator's 'Gene Evidence' function where you can find all genes associated with a given disease, including a gene... -
annovar output problems
Hi,
I have trouble making Annovar’s gene annotation tool work well.
I am working on a virus, so had to build the reference... -
SNPdat: Easy annotation of novel and known SNPs from model and non-model organisms
Dear all,
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms. (http://...
