14 results in 0.0046 seconds.
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snpeff effect prediction confusion
So I am trying to figure out why this particular complex variant was annotated with an effect of "start_lost" when I don't see any evidence... -
snpeff effect annotation confusion
So I am trying to figure out why this particular complex variant was annotated with an effect of "start_lost" when I don't see any evidence... -
snpeff effect annotation confusion
So I am trying to figure out why this particular complex variant was annotated with an effect of "start_lost" when I don't see any evidence... -
how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analy
hi everyone
i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis... -
Problem using SnpEff after Transdecoder: large number of warnings
Hi,
I am a PhD student with very little experience in bioinformatics (or very little experience at all, I started two months ago).
I’m... -
Transforming .ped files back to .vcf with original chrom. name
I am currently working on trying to obtain the general statistics on a set of SNPs. I have the original vcf file that I used in Plink to analyze for LD,... -
TAR/TIR and snpEff
Never mind answer found
PS: how can a thread that has no answer (and since I was the only visitor no interest for the community can be deleted?)...Last edited by hawknoir; 06-19-2015, 12:06 PM. -
error generating database in snpEFF
hi all,
I am trying to use snpEff (http://snpeff.sourceforge.net/).
when i try to build my genomedatabse, I keep... -
snpEFF Database building error
I am using snpEFF for SNP annotation. I am building my own database. I added genome entry to snpEff's configuration. I'm building the database from a... -
SnpSift filters for dbNSFP fields
Hi,
I am trying to filter vcf files that were previously annotated using snpsift dbsnfp.
A typical line with the annotations... -
snpEff annotation
I am trying to understand genome trax download option bed and gff files.
What is the best tool for annotating vcf files with genome trax... -
snpEff error
Hi,
I'm using snpEff and when i type:
java -Xmx2g -jar snpEff.jar -o vcf Helicobacter_pylori_26695_uid57787 xxx.vcf > xxx_ou.vcf
... -
snpEff database provenance and custom builds
I am currently using snpEff to do effect prediction and I had a few questions. First, does someone have detailed information about the provenance of... -
snpEff Reference Genome Database
Hi
I am new to snpEff and have troubles with the snpEff reference genome database for tomato (SL2.40).
When I annotated...
