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Soap denovo input files in contig file from FLASH
I am using Soap denovo for whole genome assembly. I have use trimmonatic and Flash to trim and merge my reads. Flash spits out 4 output files. My question... -
Weird stats output of SOAP de Novo
Dear all,
I have run SOAP de Novo to assemble a nematode genome.
SOAP de Novo output a stats file .scafStatistics which I do not... -
Soap de novo Input file for CISA
I want to use CISA but I am not sure about the files I have to input.
My question is regarding the SOAP results. Do I have to use just... -
Soap de novo assembly of biological replicates
I have two biological replicate DNAseq pair end data. I want to perform SOAP de novo analysis on it. I was wondering if SOAP de novo takes care of biological... -
Soap De Novo assembly interpretation
Hello!
I have run soap de novo on my assembly, and I have used different kmers. I have 12 assemblies and I need to choose the best one... -
Results from SOAPdenovo no variation
Hi there!
I have been using SOAPdenovo for a while.
With my given dataset i came across a few problems.
No matter how much... -
SOAPdenovo: Cannot open file... now exit to system!
Hello.
I am new to genome assembly, and I'm having some problems with SOAP denovo. For some reason, it can't open my fastq file specified in the... -
Knowledge about SOAPdenovo-trans
Hi all,
I found a unpublished tool for transcriptome de novo assembly: SOAPdenovo-trans http://soap.genomics.org.cn/SOAPdenovo-Trans.html but I... -
Compare Genomes
Hi everyone, I did Genome assembly by SOAPdenovo and obtained contigs and scaffolds, now I wanna compare these scaffolds to some reference genomes downloaded... -
running soap denovo
Hi,
I am trying to run SOAP Denovo, and I am following their manual instructions to run the example. Here is the command I am using:
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