19 results in 0.0021 seconds.
-
Sam file from alignment of Solid Colorspace reads using Bowtie
Hi everyone, I am mapping color-space fasta and QV files (sequenced in ABI SOLID) from a human exome, using the reference given by the GATK resources... -
SOLiD server always put the jon in Q instead of run
hello!
For the color space data, I submitted a job on lifescope server. Our server contains 4 nodes. The job shows no error message when... -
How to convert SOLiD BAMs to XSQ or csfasta?
Hi,
Is there a way to convert SOLiD BAMs back to csfasta or XSQ?
I know there is a tool for converting BAMs to fastq (bam2fastq).... -
Mate-pair sequence structural variants
I was given a mate-pair whole genome dataset that was sequenced on a SOLID 5500xl. I was interested in knowing if anyone has had any experience in doing... -
SOLID & FastQC tool kit
Hello everyone,
I have SOLiD Mate pair data which I am trying to pass through QC checks. what i did so far
1) Convert XSQ... -
SOLiD paired end data and BWA - cleaning/mapping
Hello everyone,
I notice there has been the odd post about this general topic before but I am still confused!
I have SOLiD... -
Publically available miRNAs in csfasta download
Hello all,
does anyone know, where can i download publicly available .csfasta and corresponding .qual data for miRNA ???
Thanks... -
Absence or incomplete ligation for SOLID lib prep.
Hello all,
I'm making fragment librairies on a Solid 5500XL, using LifeTech protocols and standard kits) and i am experiencing troubles... -
RNAseq (SOLiD) from 18 - 200 nt
We are interested in small non-coding RNAs. Whomever you ask about the size range of small RNAs, you get a different answer.
Lets assume, small... -
unique379 started a topic I would like to know basic pipeline for analysis of miRNA from SOLID seq data ?in SOLiDI would like to know basic pipeline for analysis of miRNA from SOLID seq data ?
We have raw data in COLOR space format (.csfasta) and would like to profile and analyze it in order to find known and novel miRNA in sample. Further we... -
Multiple queues for Lifescope
Is it possible to use multiple queues for one installation of Lifescope? For example if I have Lifescope installed is it possible to run one workflow... -
Trimming of XSQ or CSFASTA files
Hello Seqanswers community:
We did small RNA analysis using SOLiD 5500 and after putting the data in Lifescope we end up with a lot of reads from...Last edited by GenomicIBK; 04-04-2013, 04:58 AM. -
SOLiD Systems for Sale
We have some SOLiD Systems for Sale. Here are the details of each System:
SOLiD 5500 Series Genetic Analysis System: Next-Generation Sequencing... -
Sort of a noob here: looking for somatic mutation in tumors (NGS sequencing)
As sort of a pilot study, we used Solid 5500 (Agilent SureSelect Exome) to sequence one
tumor tissue and one matched normal tissue from the same... -
Comparing RNA-seq data with different read lengths
Hi All,
I work with SOLiD RNA-seq data. I have sequencing from the version 4 machine and sequencing from the 5500xl. These have different...
