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  • lre1234
    Senior Member
    • Aug 2011
    • 110
    #1

    Mate-pair sequence structural variants

    I was given a mate-pair whole genome dataset that was sequenced on a SOLID 5500xl. I was interested in knowing if anyone has had any experience in doing structural variant calling (CNV, LOH, translocations, etc) with using this kind of data, and what the "best" approach. Or if anyone has done structural varaint calling with mate-pair in general and what they used for it.
    Thanks
    Tags: mate-pair reads, solid 5500, structrual variation
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