Hello,
I'm wondering how one can I know if a gene has a germline or somatic mutation from the data I have.
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6 results in 0.0028 seconds.
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problems with varscan2.3.7
hi,
i am using varscan in the following command for germline/somatic calls:
samtools mpileup -q 20 -Q 20 -f hg19.fa -B file_norm... -
Filter somatic calls in Pindel output
I'm running Pindel on some normal/tumor pairs. A lot of calls seem to be germline. Is there a filtering script out there to get the somatic calls? -
VarScan2. Strange behaviour of somatic-p-value
Hi community of SEQanswers,
I'm running varscan2 for somatic mutation calling following the commands of its documentation: mpileup + varscan...Last edited by slois; 04-03-2014, 08:01 AM. -
Copy number variation in cancer WGS
Hi guys,
I am looking at some whole genome sequencing (WGS) for tumor-normal pairs, and I want to find somatic copy number alteration... -
VarScan somatic indel caller working incorrectly?
Hi
I am seeing a seemingly incorrect somatic indel call using VarScan somatic.
The VarScan output line is
chr2 178883096 T +TAAC...
