49 results in 0.0042 seconds.
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Analyzing PacBio sequel data and SRA
I am new to NCBI's SRA and pacbio sequencing data analysis. I am trying to download pacbio sequence data from SRA and my goal is get CCS (Consensus) reads... -
Merging transcriptomes coming from SRA: caveats and best practices?
I'm about to start a project where I want to pool all existing transcriptomes in SRA for a nonmodel species without reference genome to study differentially... -
Downloading 'RunInfo Table' from SRA Run Selector
Hello,
I would like to download the metadata for a given BioProject from the SRA. I am able to get exactly what I need by hitting the download... -
NCBI SRA & TSA submission tutorial
We have just published a very detailed guide to submitting RNA-Seq reads to NCBI's SRA, and transcriptome assemblies to TSA. We have often felt the need... -
Does BAM file from SRA contain aligned reads?
Hello, everyone. I need to do SNP calling for the first time, so I have a couple questions.
For example, I want to use this sample https://tra... -
EBI Metagenomics: How to analyze NCBI data?
Uploaded and public data from NCBI-SRA is mirrored and accessible at ENA (European Nucleotide Archive).
EBI Metagenomics is a pipeline that analyzes... -
Query individuals with both WGS and RNA-Seq data
Using the SRAdb R package, I am looking to query individuals who possess both WGS and RNA-Seq data on the Sequence Read Archive. So far I believe I have... -
Single sample, more than one SRA file
Hello All,
I want to download some samples from the SRA (http://www.ncbi.nlm.nih.gov/geo/quer...i?acc=GSE22411) but sometimes a single... -
SRA issue
I am trying to use SRA to download public data SRR2129993. Running 'fastq-dump SRR2129993 -X 5 -Z' i get the output i expect - 5 spots read and write.... -
Uploading PacBio raw data to ENA SRA
Surprisingly I was not able to find anything on Google about the details of uploading raw PacBio sequence reads to the European Nucleotide Archive (ENA),... -
SRA Metadata File - Sample Submission
Hi, I'm trying to submit WGS samples to SRA using the SRA Submissions Portal.
I'm stuck at the SRA metadata step of Biosample submission.... -
SRA data in pileup format
Hello all,
I'm trying to use the first pileup file the below link points to:
http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SR... -
Casava FASTQ from SRA
Dear all,
I am currently trying to perform quality checks on a set of FASTQ files (downloaded from SRA) that (according to the authors)... -
Truncated File: Trouble with SRA > Fastq > Sam
Hi everyone,
I know there have been several posts regarding truncated SAM files, but I'm having a difficult time finding a solution.... -
How do people know if a SRA dataset is generated by normalized cDNA library or not?
I am looking for RNA-seq data generated from non-normalized cDNA library. However, many datasets I have looked at do not show this information. How should...
