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What tools can I use to assign taxonomic rank to megablast outputs?
I have a couple of transcriptomic sequences that were generated with different sequencing platforms such as Miseq and Hiseq. The output format is hence... -
fastq-dump for dummies
Can someone provide a dummies guide to fastq-dump? I mean a really dumb guide: download here, install here, open it by doing this, do this to an sra to...Last edited by UpsetNotMad Scientist; 10-26-2012, 09:52 AM. -
reads position in reference sequence(sam file)
Hi all,
there are some reads aligned. the .sam output file produced using bowtie, is like bellow and i want to extract aligned reads and... -
sra-lite to fastq problem: no output
Hi all,
I've downloaded sra-lite files, and am trying to convert them to .fastq using fastq-dump (version 2.0.1, which I compiled from... -
Need workflow from SRA to BreakDancer
I am flummoxed by "fastq" formats. My goal for the moment is to test out BreakDancer to find translocations at low coverage. I don't have our...
