Hi,
I am processing data from a dual-RNAseq experiment where one sample contains reads from both an insect host and a bacterial symbiont....
5 results in 0.0021 seconds.
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Strandedness of dual-RNAseq samples
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How to align to genome and transcriptome coordinates at the same time with STAR?
Hi everyone,
I am analyzing a Ribosome Profiling and RNA-Seq dataset. For the analysis I am trying to repeat another published pipeline.... -
"Stranded" data may actually be unstranded?
Hello!
I have some paired-end RNA-seq data that I was told were "stranded", but nothing about whether it's RF or FR.
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Remove reverse complement redundancy in stranded transcriptome
Hi All,
We are working with a de novo transcriptome assembly of Illumina Hi-seq data - 20x 100 bp paired end, stranded libraries. Raw data underwent... -
truseq paired reads - what strandedness parameters in tophat?
In RNA-seq, paired ends, stranded, done with TrueSeq - what parameter in tophat should be applied to see strandedness properly?
fr-firststrand...
