*or maximum
We are studying structural variation in several plant genomes Illmumina pair-end DNA re-sequencing, and noticed that the number...
14 results in 0.0032 seconds.
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Minimum (ir maximum) bam depth/coverage for structural variation analyses
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What are the best tools/practices for CNV detection/analysis?
I am looking for the current state-of-the-art tools/practices for CNV (structural variation) detection/analysis for family (trio) data produced by Illumina.... -
Live webinar Tue Aug 25: MetaSV - An accurate & integrative structura variant caller
Register: https://bina.webex.com/bina/onstage/...82284088dad9c4
Join us for an educational webinar on Tuesday... -
Breakdancer Output in multisample problem
Hi everyone,
I have 4 samples (matepair illumina) and run Breakdancer_max as follows:
bam2cfg.pl -h -g -q 10 sample1.bam sample2.bam sample3.bam... -
Soft-clipping resequencing panel
Hello guys,
I have some issues to understand the soft-clipped reads. I am analyzing a targeted resequencing panel. I trimmed the FASTQs, but I found...Last edited by BnaT; 12-18-2014, 07:03 AM. -
SV reads in whole genome
I'm looking at reads from genomes that definitely include structural variation (based on Breakdancer and SVDetect) and I'm running into something that...Last edited by saraki; 08-31-2014, 08:19 AM. -
CNV and SV analysis of Complete Genomics data
Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?
Has anyone... -
Complete Genomics CNVs and SVs
Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?
Has anyone... -
PBHoney - PacBio Structural Variant Caller
Just released PBHoney, a structural variant caller for pacbio long reads. Check it out at http://sourceforge.net/projects/pb-jelly/
First release... -
How to extract split-reads from Pindel output
Is there a way to do it?
I couldn't make sense how to find the split-reads an its header from
the output.
Example output... -
Postdoc Computational Biology: ICGC whole pan-cancer genomes
Postdoctoral Fellowship: Computational biology of ICGC pan-cancer genomes – integrative data analysis of cancer genome and polyomic datasets
... -
Structural variation using paired-end reads
I have resequenced a bacterial genome using paired-end SOLiD reads (75+35 bp).
Which software is recommended to detect large insertions... -
Questions about too many INV_Dupli detected by SVDetect (inverted duplication)
Recently I am trying to use SVDetect to characterize the somatic Structural variations on my cancer whole exome data. Many small inverted duplication(INV_DUPLI)...Last edited by bioliyezhang; 09-07-2012, 10:52 AM. -
mapping parameters for SV/CNV discovery
Hi!
I'm begining to work on the SV/CNV dicovery field. I found many different methods to do this. The majority of them take as input mapped...
