Hi,
Can anyone please help me understand why i get ID the same names in VCF file (mine is SV from svaba) with name:1 name:2, .Isn't that the same...
9 results in 0.0021 seconds.
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structural variation analysis from NGS data (Paris, france)
Description of the position
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific... -
gasv Problems with CHROMOSOME_NAMING
Hello,
I am using GASV with my own genome, so I need to put the parameter -CHROMOSOME_NAMING, where I put one file called scaffold.txt with this... -
Looking for a pipeline - SV detection mit mate pair
Hey guys,
I am trying to set up asimulation to estimate what mate pair coverage I need to detect a big deletion in my cthromosom. The steps... -
Misunderstanding breakdancer output
Hello
I am running breakdancer for my samples and I get some results that I don't understand.
For example I get these:
1.... -
BreakDancer - Cancer/Normal Matching
Hi. I'm using BreakDancer to find structural variations in a paired set of samples. One sample is a tumor and the other is the matched normal sample.... -
split read SV identification
Could anyone suggest a good tool to identify indels/SVs based on split-reads (like the ones generated by bwa-sw). -
Structural variation detection using BreakDancer on Whole Genome SOLiD data
Hello,
I have been struggling for the last few weeks to get Breakdancer to run accross some whole genome data. The data was sequenced... -
Nature Methods AOP: CREST maps somatic structural variation in cancer genomes...
http://www.nature.com/nmeth/journal/...meth.1628.html
Yet another SV detection program. Of course, this one claims to...
