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understanding VCF ids

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  • understanding VCF ids

    Hi,
    Can anyone please help me understand why i get ID the same names in VCF file (mine is SV from svaba) with name:1 name:2, .Isn't that the same event?
    2271991796:1
    2271991796:2

    Thank you


    tpg|BK006946.2| 924303 2271991796:1 A ]tpg|BK006946.2|:924542]A 12 PASS DISC_MAPQ=20;EVDNC=DSCRD;IMPRECISE;MAPQ=20;MATEID=2271991796:2;MATENM=-1;NM=-1;NUMPARTS=0;SCTG=tpg|BK006946.2|:924303(-)-tpg|BK006946.2|:924542(+)__15_906501_924431D;SPAN=239;SVTYPE=BND GT:ADP:GQ:PL:SRR:LR:LO 0/1:9:62:12.5:12.5,0,141.2:0:9:-12.28:18.85 tpg|BK006946.2| 924542 2271991796:2 G G[tpg|BK006946.2|:924303[ 12 PASS DISC_MAPQ=18;EVDNC=DSCRD;IMPRECISE;MAPQ=18;MATEID=2271991796:1;MATENM=-1;NM=-1;NUMPARTS=0;SCTG=tpg|BK006946.2|:924303(-)-tpg|BK006946.2|:924542(+)__15_906501_924431D;SPAN=239;SVTYPE=BND GT:ADP:GQ:PL:SRR:LR:LO 0/1:9:62:12.5:12.5,0,141.2:0:9:-12.28:18.85

  • #2
    Originally posted by EHC View Post
    Hi,
    Can anyone please help me understand why i get ID the same names in VCF file (mine is SV from svaba) with name:1 name:2, .Isn't that the same event?
    2271991796:1
    2271991796:2

    Thank you


    tpg|BK006946.2| 924303 2271991796:1 A ]tpg|BK006946.2|:924542]A 12 PASS DISC_MAPQ=20;EVDNC=DSCRD;IMPRECISE;MAPQ=20;MATEID=2271991796:2;MATENM=-1;NM=-1;NUMPARTS=0;SCTG=tpg|BK006946.2|:924303(-)-tpg|BK006946.2|:924542(+)__15_906501_924431D;SPAN=239;SVTYPE=BND GT:ADP:GQ:PL:SRR:LR:LO 0/1:9:62:12.5:12.5,0,141.2:0:9:-12.28:18.85 tpg|BK006946.2| 924542 2271991796:2 G G[tpg|BK006946.2|:924303[ 12 PASS DISC_MAPQ=18;EVDNC=DSCRD;IMPRECISE;MAPQ=18;MATEID=2271991796:1;MATENM=-1;NM=-1;NUMPARTS=0;SCTG=tpg|BK006946.2|:924303(-)-tpg|BK006946.2|:924542(+)__15_906501_924431D;SPAN=239;SVTYPE=BND GT:ADP:GQ:PL:SRR:LR:LO 0/1:9:62:12.5:12.5,0,141.2:0:9:-12.28:18.85
    Hello, I hope you are fine, can you tell us the log file eateries also.

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