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  • #1

    gasv Problems with CHROMOSOME_NAMING

    Hello,
    I am using GASV with my own genome, so I need to put the parameter -CHROMOSOME_NAMING, where I put one file called scaffold.txt with this format:
    scaffold_1
    scaffold_2
    scaffold_3
    scaffold_4
    scaffold_5
    scaffold_6
    scaffold_7
    scaffold_8
    scaffold_9
    scaffold_10
    ...
    Acording to my results ("filename"_all.deletion):
    3033874 3033974 + HWI-ST700660_99:2:1101:7692:3237#4@0 3034425 - 3034325

    the format should be wrong because there is no information of the scaffold.
    could you help me, please?
    Thanks!
    Tags: gasv, structural variations
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