Hello
I am running breakdancer for my samples and I get some results that I don't understand.
For example I get these:
1....
7 results in 0.0022 seconds.
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Misunderstanding breakdancer output
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BreakDancer empty cfg (no output from bam2cfg)
Hi, everyone, I had spent days to do trouble-shooting on bam2cfg.pl,
breakdancer-1.1_2011_02_21.zip. I had tried some ways to figure out the problem,...Last edited by zhongj; 12-14-2011, 01:50 AM. -
Help picking up an abandoned sequencing project
Hello All,
My lab has gotten two runs of mouse genome sequences from two genomes. Both runs are paired end sequenced, once with 36bp and...Last edited by giror; 06-17-2011, 08:44 AM. -
Breakdancer versus Pindel
Hi all,
I am hesitating between Breakdancer and Pindel/Dindel for structural variation (SV) and indel detection. Does someone has ever... -
Insert size for paired end sequencing for identification of structural variation
Dear all,
Does anyone have any experience of the ideal fragment size for paired end sequencing looking at structural variation in whole genome... -
unexpected high number of chromosomal translocation from paired-end data
Hi,
I’m carrying some analysis using paired end human cancer data (50b reads / 200-500b gap) generated by GA II sequencer to find out... -
How to find structure variations from paired end sequencing in SAM format
hello, everyone.
I used software bwa to align my PE sequence to the reference, and got the alignments in SAM format.
But I could not extract...
