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SNP Bacterial Genomes per year
I am looking at SNP trees for bacterial genomes (mostly N. gonorrhoeae, S. aureus and E. faecium) and I am following outbreaks in society and on hospital... -
mpiBLASTx
Hello,
This might be the wrong sub-forum, but how long should 55,000 cDNAs take to blastx using mpiBLAST? We are using 16 nodes.... -
Time series issue,no time 0!
Hi everybody
I have encountered a problem during analysis of time series data.
I particular, in my data, I have 2 condition(in replicates)... -
Estimation time on de novo assembly
Hi folks:
I am trying to do a de novo assembly. The pair read length is around 100bp, we have around 600 million reads. The estimated size of... -
clustal alignment
Hi all,
I have to plan a little my work, and I have a question I am not finding answer.
How long could a clustal run be?
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Tophat2 "joining segment hits" does not complete
Tophat2 runs nicely (6 hours) up to the step "joining segment hits". But this step (single core process, named "long_spanning_reads")...Last edited by Sniwells; 10-17-2012, 11:20 AM. -
Approximate botwie runtime
this maybe a general question, from reading the article at http://genomebiology.com/2009/10/3/R25, I kind of feel that the instance of bowtie that I... -
Time required for exome assembley
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Mosaik Alignment Problems
Dear SEQanswers community,
I am trying to use MosaikAligner on paired end Illumina reads. I first ran MosaikBuild on my reference sequence,...
