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  • clustal alignment

    Hi all,

    I have to plan a little my work, and I have a question I am not finding answer.
    How long could a clustal run be?

    That would be using clustalw-2.1, and doing a multiple alignment on 10 fasta sequences of about 150 kb. The type of alignment is "slow/accurate", the ouput a PHYLIP file, and all the options are on default values.
    I'm thinking on running it on a MacBook 3.1 with 4 Gb of RAM.

    What do you think? Would that be too much for a laptop?

    Thanks in advance.

    Marco

  • #2
    why not use mega?

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    • #3
      No, but I'd use muscle instead of clustal..
      savetherhino.org

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      • #4
        From my experience with mitochondrial and chloroplast alignments, Id say less than a week. You could try Clustal-omeg. Im pretty sure its multi-threaded

        Your laptop should handle it

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