We are proud to announce the release of UMI-Tools 0.5.
UMI-tools provides error aware tools for dealing with short random oligos (Unique...
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UMI-Tools version 0.5: now with tools for cell barcoded scRNA-seq
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MaSuRCA Consensus error
Hi, I'm using MaSuRCA with a single .fastq file as PE input, and 5-consensus directory isn't made during the run time so of course it doesn't have access... -
stql_start started a topic An SQL-like language (STQL) and A web site tool (START) for querying signal tracksin GeneralAn SQL-like language (STQL) and A web site tool (START) for querying signal tracks
We have developed a query language called the Signal Track Query Language (STQL). It is an SQL-like declarative language for analyzing genomic signal...Last edited by stql_start; 03-03-2016, 01:18 AM. -
Tools to predict genes with RNA sequence
I have got a set of transcript sequence from RNA-seq in fasta. The referenced genome sequence is also known. Now I want to discover new genes from the... -
How can i get the number of read aligned to one scaffold
Hi.
I want to get the number of reads aligned to one scaffold.
more specifically,
I want to get the number of reads that... -
Tools to plot ChIP-Seq signals in batch
Hi Guys,
I wonder if there are tools available for plotting ChIP-Seq signals like attachment (from Tsankov, A. M., et al. (2015). "Transcription... -
Automating RNA-SEQ TUXEDO PIPELINE
Hi All,
I am looking for a workflow tool which can automate TUXEDO pipeline and also profiles the tool with minimal installation and if... -
Compare capture region
My question that since there are so many different exome capture technologies, is there any tool for comparing all of them ?
We have a... -
Compare difference capture technologies
Please let me know if I'm posting in the wrong place.
My question that since there are so many different exome capture technologies,... -
Local pattern searching algorithm
Hi everyone,
Does anybody maybe know of a good DNA and/or protein pattern searching algorithm that you can on your local server? I've been... -
BioGyan: Search Mine Annotate
BioGyan (http://www.biogyan.com/) is a comprehensive search tool specially designed for biologists, enabling search, annotation and ranking of scientific... -
InDel finding tool
I'm making an InDel finding tool for NGS data and would like to know from the community what do you think would be the best features to include in this?... -
Tool to take mapping to gene list
Hello all,
I am relatively new to NGS and have just mapped a series of reads to a genome using Bowtie2. As I understand, the SAM/BAM output...
