Hi.
I want to get the number of reads aligned to one scaffold.
more specifically,
I want to get the number of reads that aligned to one scaffold with more than 90% or 50 % matched from bam file for assembly assessment.
Is there any tool can i use for purpose??
thanks
I want to get the number of reads aligned to one scaffold.
more specifically,
I want to get the number of reads that aligned to one scaffold with more than 90% or 50 % matched from bam file for assembly assessment.
Is there any tool can i use for purpose??
thanks