I noticed that in Bowtie, the default is using -n, where it considering quality score. -v option does not consider quality score.
However,...
5 results in 0.0022 seconds.
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Bowtie -n vs. -v, which one should we use?
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trimming in tophat
Hi all,
I am trying to analyse my PE Illumina data using tophat.
At first I run fastqc. Checking the raw data, I discovered... -
TOPHAT EMPTY accepted_hits.bam ISSUE
Folks..!
I've been running tophat since a couple of weeks and I've seen no success so far
I have colorspace transcriptome data... -
Bow-tie inspect returned an error
Hi all
I'm trying to run TopHat for the first time. I've checked the installation with the complementary test data set and that worked.... -
Cuffdiff splicing.diff
Hello everyone,
I just want to clarify the differences between two of the cuffdiff output files, splicing.diff and isoform_exp.diff. Splicing.diff...
