When? Dec 8-11, 2025
Where? Berlin, Germany...
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1st Berlin Winter School in RNA-Seq Data Analysis (Dec 8-11, 2025)
Advance your research. Understand RNA-Seq analyses challenges and solve them yourself.
When? Dec 8-11, 2025
Where? Berlin, Germany... -
Beyond Sequencing: The Spatial Dimensions of the Transcriptome
Spatial technologies have improved our understanding of the transcriptome by providing insights into the spatial organization and interactions of cells. While next-generation sequencing (NGS) remains an important approach and is the main focus of our community, its data alone is unable to resolve unique spatial information. Jacob Stern, Director of Product Management at 10X Genomics, emphasized how numerous researchers choose to use both spatial platforms and single-cell... -
Minimum transcriptome requirement for genome annotation
Hi,
I would like to know if there is any information available on the minimum number of transcriptomes required to get a genome annotation... -
Cancer Genomics Postdoctoral Positions Available
A Postdoctoral Scholar position in the area of Cancer Genomics and Bioinformatics is available in the laboratory of Dr. Christopher Maher (www.maherl... -
quantifying transcripts in a redundant genome
Hi,
I am trying to quantify the number of reads mapping to genes in a highly redundant bacterial genome (i.e., often several exact gene... -
Program for clustering rna seq reads using protein database
I have an RNA Seq data that I have used to assemble a de novo transcriptome, however, I am having trouble clustering it down into a final set of putative... -
Studying soil microbial communities
I will sequence DNA and RNA from grassland soils using Illumina HiSeq to see differences in composition and functionality (removing 16S). I will use DNA... -
Cleaning up, merging de novo transcriptomes to create a quality reference
Hello,
I have about 950 million reads from an RNA-Seq data set that covers many developmental time-points. Assembling all the reads doesn't... -
is it possible to filter small RNA from a regular transcriptome?
Dear all,
I was wondering if anyone has ever tried filtering (potential) small RNA from a regular RNAseq transcriptome .
I have 38... -
Postdoc Opportunities in Computational RNA Biology/Bioinformatics Postdoc
Position Summary:
A Computational Biology/Bioinformatics Postdoctoral Scholar position focusing on cancer genomics is available in the laboratory... -
HISAT2 tran and snp indices
HISAT2 supplies a list of pre-built indices on their webpage:
https://ccb.jhu.edu/software/hisat2/index.shtml
Some of these... -
Research Technician @ Harbor Branch, Florida Atl Univ
Senior Research Technician Needed
**We have a QuantStudio and are getting a MinION**
For more information about us: htt... -
Tophat transcriptome indexing
Hi,
I'm trying to use tophat on some data and am having an issue. I want to make a transcriptome mapping file like this:
... -
Various analysis we can do after the Denovo assembly of Transcriptome sequencing data
Dear All,
What all analysis we can do after the Denovo assembly of Transcriptome sequencing data of a species. I can mention some such... -
In silico Fragmentation for a transcriptome?
Hi,
Is there a way to in silico fragment a transcriptome into 200 bp fragments?
Thanks,
Andor
