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Jbrowse configuration file for specific usage
Hello, i am looking for help with visualization of my files from Chado database in Jbrowse. I am using biodb-to-json.pl but i am not able to write configuration...
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shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
Dear All:
I am pleased to announce the world’s fastest interactive heatmap visualization software, presented as a user-friendly, open-access...
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DNA mtethylation data analysis
Hi,
I want some problem in loading data to visualisation tools.
I want to do annotations for methylcytosines (mCs) in three...
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Visualizing BLAST output
What tools would you recommend to visualize blast tsv output? I found several ones but none of them work with tab (or comma) delimited formats.
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Postdoctoral Scholars in Biological Visualization @ George Washington University
Overview
The Interactive Genomics Lab at George Washington University (http://jeremygoecks.com) is recruiting creative and motivated postdoctoral...
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Visualizing Bowtie results in Galaxy
Hello,
I have just done my very first run of bowtie, via galaxy. I want to get an idea of whether it worked at all... but I have no idea...
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Not a Big Deal, GRCh38: A Semi-Casual Comparison of the New Human Reference Genome
Over christmas GRCh38, the newest human reference genome assembly, was released.Internally we have been using chromosome 20 of human reference builds...
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RNA-Seq Pathway and Gene-set Analysis Workflows in R/Bioconductor with GAGE/Pathview
The gage package (2.12.0) now includes a new tutorial, "RNA-Seq Data Pathway and Gene-set Analysis Workflows". Note you need to update to current...Last edited by bigmw; 10-21-2013, 03:52 PM.
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Problem with visualizing Chip-Seq peaks
Hi there,
I am having trouble to visualize my Chip-Seq peaks called by MACS in two subsequent biological replicates.
I let MACS...
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visual way to run pipelines on Sun Grid Engine, etc.
Hi everyone! I've been working on software that lets people who use Sun Grid Engine (or similar) execute and monitor their data pipelines visually. It...
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Relative methylation density / composition plot
I have MeDIP-seq data on two different cell lines. I'd like to produce a figure like figure 3a from this paper, showing the relative amount of methylation...