Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • orthodoc
    Junior Member
    • Oct 2013
    • 2
    #1

    cummeRbund: combine data sets / multiple experiments on one graph?

    Hi all,

    I am using cummeRbund to visualize the results of multiple separate cuffDiff analyses. I would like to combine the results to visualize all of these runs on the same graph. Each cuffDiff run was of the format condition A vs condition B, C, or D, etc. Similarly, the results are reported as "q1" vs "q2" where "q1" is always condition A, but "q2" could be condition B, C, or D.

    Does anyone know if or how i can combine these cuffData sets in R to visualize the results from multiple experiments simultaneously? I have tried combining the ggplot objects created by cummeRbund but have thus far not had any luck.

    Any suggestions would be MUCH appreciated. Thanks!
    Tags: cuffdiff, cummerbund, ggplot, graph, visualization
  • sindrle
    Senior Member
    • Aug 2013
    • 266
    #2
    Hows your progress with this?

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • SEQadmin2
      Nine Things a Sample Prep Scientist Thinks About Before Sequencing
      by SEQadmin2


      I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

      Here are nine questions we think about, in roughly the order they matter, before...
      06-18-2026, 07:11 AM
    • SEQadmin2
      From Collection to Sequencing: Why Sample Preparation and Preservation Define Sequencing Data
      by SEQadmin2


      Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.

      The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
      ...
      06-02-2026, 10:05 AM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Whole-Genome Sequencing Traces Faroe Islands Ancestry to a North Atlantic Founder Population by SEQadmin2
    Started by SEQadmin2, 06-17-2026, 06:09 AM
    0 responses
    41 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    06-17-2026, 06:09 AM  
    Sequencing the Two-Toed Sloth Genome Reveals Jumping Genes Tied to Its Extreme Metabolism by SEQadmin2
    Started by SEQadmin2, 06-09-2026, 11:58 AM
    0 responses
    102 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    06-09-2026, 11:58 AM  
    A New Method Makes Hantavirus Genome Analysis Faster and More Accessible by SEQadmin2
    Started by SEQadmin2, 06-05-2026, 10:09 AM
    0 responses
    123 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    06-05-2026, 10:09 AM  
    A New Single-Cell Method Maps DNA-Protein Interactions by SEQadmin2
    Started by SEQadmin2, 06-04-2026, 08:59 AM
    0 responses
    114 views
    0 reactions
    		 Last Post SEQadmin2
    by SEQadmin2
    06-04-2026, 08:59 AM  
    View All
    Working...