DNA mtethylation data analysis

yusufkhan

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Join Date: Nov 2010

Posts: 2
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DNA mtethylation data analysis

03-05-2017, 12:46 PM

Hi,

I want some problem in loading data to visualisation tools.

I want to do annotations for methylcytosines (mCs) in three sequence contexts: CG, CHH, CHG of two foxtail millet cultivars (IC4 & IC41) specifying following regions in the genome such as Gene, 3prime_UTR, 5prime_UTR, exon CDS, Intron, TSS, Promoter (1.5kb upstream), upstream (1.5kb), TE and smRNA

I have summary data of plant samples of two cultivars in the following format.

9 618 618 100 1 0
9 626 626 100 1 0
9 638 638 100 1 0
9 642 642 100 1 0
9 662 662 100 1 0
9 672 672 100 1 0
9 689 689 66.6666666666667 2 1
9 700 700 50 2 2
9 720 720 100 4 0
9 726 726 100 4 0

Please let me know how to proceed for analysis and visualize

Thanks in advance
Tags: annotate, methylation, visualization

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