Hi,
From the supplementary data of a paper, I have an excel sheet that contains the ChIP-seq data. The excel sheet has chromosome number, start and end coordinates of the read and number of reads in the ChIP and background and something like a score (I think it's the peak hight). These are only the selected genes which show binding of the protein.
Now, I want to somehow map this to the genome or have a way to identify those genes. Is there anyway that I can convert those coordinates to gene names? since those read should mainly happen upstream of the gene, would I be able to know the genes next to them?
thanks and I'm sorry about my very poor sequencing knowledge.
-k
From the supplementary data of a paper, I have an excel sheet that contains the ChIP-seq data. The excel sheet has chromosome number, start and end coordinates of the read and number of reads in the ChIP and background and something like a score (I think it's the peak hight). These are only the selected genes which show binding of the protein.
Now, I want to somehow map this to the genome or have a way to identify those genes. Is there anyway that I can convert those coordinates to gene names? since those read should mainly happen upstream of the gene, would I be able to know the genes next to them?
thanks and I'm sorry about my very poor sequencing knowledge.
-k
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