--min-var-freq Varscan2mplieup - SEQanswers

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Joanna_trinh

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Join Date: Apr 2015

Posts: 3
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--min-var-freq Varscan2mplieup

04-26-2015, 06:48 AM

Hi guys!

Does anyone understand the option "--min-var-freq" of Varscan2mpileup? I know this means mimimum variant allele frequency to call SNPs but I feel it is not clear. Anyone help me? thanks.
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