I'd like to assemble a fasta file of sequences with read lengths varying from 200 - 200,000 bases.
I've assembled 150 bp illumina reads using IDBA-UD. Now I have various files with thousands of contigs. I'd like to organize contigs from different assemblies into bins and then assemble the binned contigs into longer contigs. I don't know how to carry out this assembly.
I only have experience assembling short reads from a sequencing run. I have no idea how to assemble long contigs together. Any ideas?
I've assembled 150 bp illumina reads using IDBA-UD. Now I have various files with thousands of contigs. I'd like to organize contigs from different assemblies into bins and then assemble the binned contigs into longer contigs. I don't know how to carry out this assembly.
I only have experience assembling short reads from a sequencing run. I have no idea how to assemble long contigs together. Any ideas?
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