I worked my way through the cummeRbund manual and so far I'm really impressed with it. However, I have a few questions as I'm new to R and I couldn't find the solution to these in the manual:
1). After finding similarly expressed genes using:
mySimilar<-findSimilar(cuff,"PINK1",n=20)
how do I write the expression data (with statistics) for these genes to a file?
2). How can I produce a heatmap of all differentially expressed genes?
3). I have a list of gene IDs in a text file - how can I produce a heatmap of these?
1). After finding similarly expressed genes using:
mySimilar<-findSimilar(cuff,"PINK1",n=20)
how do I write the expression data (with statistics) for these genes to a file?
2). How can I produce a heatmap of all differentially expressed genes?
3). I have a list of gene IDs in a text file - how can I produce a heatmap of these?
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