Hi,
Is there a simple way to make strand-specific .wig file (i.e., a separate track for + and - strand) from paired-end data (where the second read maps to the other strand)? genomeCoverageBed doesn't seem to handle this well. Any alternatives?
Igor.
Is there a simple way to make strand-specific .wig file (i.e., a separate track for + and - strand) from paired-end data (where the second read maps to the other strand)? genomeCoverageBed doesn't seem to handle this well. Any alternatives?
Igor.
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