miR sequencing: miR and miR*, sense and antisense

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das

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Join Date: Jun 2009

Posts: 16
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miR sequencing: miR and miR*, sense and antisense

10-21-2009, 06:27 AM

Hi:
I was wondering what people are doing with their miRNA data to quantitate
miR and miR* from their sequence reads (SOLID in my case).Especially novel miR*.
(I wish they change miR* nomenclature to more sensible 3p-5p one)
Is anybody aware of any computational approaches to automate miR vs miR*
quantitation? Also I was wondering how people are addressing sense - antisense
mapping issues related to ds regions in pre-miRs?
Thanks
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