Thanks Likun,
I was confused by the q-value. It all makes sense now.
- Nick
I was confused by the q-value. It all makes sense now.
- Nick
You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion
Control Gene Count RPKM total no. reads gene length ABAT 811 1.57049 87082676 5930 Mutant ABAT 4264 10.3046 69779755 5930
library(DEGseq) sample1 <- "D:/data/sample1.txt" sample2 <- "D:/data/sample2.txt" refFlat <- "D:/data/refFlat.txt" mapResultBatch1 <- c(sample1) mapResultBatch2 <- c(sample2) outputDir <- "D:/data/DEGseqExample" DEGseq(mapResultBatch1, mapResultBatch2, fileFormat = "eland",refFlat = refFlat, outputDir = outputDir, method = "LRT")
hist(LogVal(Sample1),main=label1,xlab="log2(Number of reads mapped to a gene)",col=4,breaks=100,freq=FALSE,ylim=c(0,0.5))
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Exploring French-Canadian Ancestry: Insights into Migration, Settlement Patterns, and Genetic Structure
by seqadmin
Started by seqadmin, 05-26-2023, 09:22 AM
|
0 responses
8 views
0 likes
|
Last Post
by seqadmin
05-26-2023, 09:22 AM
|
||
Started by seqadmin, 05-24-2023, 09:49 AM
|
0 responses
15 views
0 likes
|
Last Post
by seqadmin
05-24-2023, 09:49 AM
|
||
Introducing ProtVar: A Web Tool for Contextualizing and Interpreting Human Missense Variation in Proteins
by seqadmin
Started by seqadmin, 05-23-2023, 07:14 AM
|
0 responses
30 views
0 likes
|
Last Post
by seqadmin
05-23-2023, 07:14 AM
|
||
Started by seqadmin, 05-18-2023, 11:36 AM
|
0 responses
116 views
0 likes
|
Last Post
by seqadmin
05-18-2023, 11:36 AM
|
Comment