Hi all,
I would like to know if I can run Cutadapt on my transcriptome assembly (not raw reads but final assembly). Does anyone have experience with this? Should I use BLAST instead? I would like to see how much adapter contamination I have in my assembly without having to re-do my assembly (i've invested too much time already on this assembly!).
Thanks!!!
Veronica
I would like to know if I can run Cutadapt on my transcriptome assembly (not raw reads but final assembly). Does anyone have experience with this? Should I use BLAST instead? I would like to see how much adapter contamination I have in my assembly without having to re-do my assembly (i've invested too much time already on this assembly!).
Thanks!!!
Veronica