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CummeRBund heatmap question
Hi,
I was wondering if anyone knew how to make a heatmap in CummeRbund and display the dendogram.
Right now i am using the following to display my heatmap:
manipulate(csHeatmap(sigGenes,rescaling='none',clustering=clus,labCol=T,labRow=T,logMode=T,pseudocount=1.0,border=border,heatscale=c(low='lightyellow',mid='orange',high='darkred'),heatMidpoint=NULL,fullnames=T,replicates=replicates,method=method), clus=picker("row","column","none","both"), replicates=checkbox(TRUE,"Draw Labels"),border=checkbox(TRUE, "Show Border"),method=picker("row","column","none","both"))
Anyone know how I could display the dendogram with this in CummeRbund?
Thanks
,
Sara
I was wondering if anyone knew how to make a heatmap in CummeRbund and display the dendogram.
Right now i am using the following to display my heatmap:
manipulate(csHeatmap(sigGenes,rescaling='none',clustering=clus,labCol=T,labRow=T,logMode=T,pseudocount=1.0,border=border,heatscale=c(low='lightyellow',mid='orange',high='darkred'),heatMidpoint=NULL,fullnames=T,replicates=replicates,method=method), clus=picker("row","column","none","both"), replicates=checkbox(TRUE,"Draw Labels"),border=checkbox(TRUE, "Show Border"),method=picker("row","column","none","both"))
Anyone know how I could display the dendogram with this in CummeRbund?
Thanks
, Sara