Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • problem in using ERANGE

    hello everyone,

    I am working on SOLiD platform and want to use SOLiD data for RNAseq analysis. For that i am trying to utilize bowtie for mapping an ERANGE for RPKM. For bowtie mapping we need expanded genome. i am trying to utilize getsplicefa.py of ERANGE to get splice file. but while doing this is am getting the following error:

    psyco not running
    /share/apps/ERANGE/project/genome/commoncode/getsplicefa.py: version 3.2
    43180
    369006
    could not get chr3:72692980-72695247
    could not get chr3:72695415-72695619
    could not get chr3:72695669-72704339
    could not get chr3:72704428-72707527
    could not get chr3:72707652-72708182
    could not get chr3:72708239-72708321
    could not get chr3:72708406-72711003
    could not get chr3:72711152-72712888
    could not get chr3:72713005-72713089
    contt...

    Any help is appreciable

    Saha

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    Today, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 08:18 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, Today, 08:04 AM
0 responses
10 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-03-2024, 06:55 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-30-2024, 03:16 PM
0 responses
27 views
0 likes
Last Post seqadmin  
Working...
X