Hi,
I'm trying to trim RNAseq with a bad quality score with bioconductor. My main problem is that the sequenes are paired-end and I want to keep "orphan" sequences generated by the trim in another files.
I know that some programs like Trimmomatic do that automaticly. I wonder if something like that exist in R. Wh
at I find are functions from Biostring (trimLRPattern) and ShortRead. They are usefull for delete patterns and adapter, but can't find functions for delete entire sequences, keeping the paired-end.
Thanks.
Romain.
I'm trying to trim RNAseq with a bad quality score with bioconductor. My main problem is that the sequenes are paired-end and I want to keep "orphan" sequences generated by the trim in another files.
I know that some programs like Trimmomatic do that automaticly. I wonder if something like that exist in R. Wh
at I find are functions from Biostring (trimLRPattern) and ShortRead. They are usefull for delete patterns and adapter, but can't find functions for delete entire sequences, keeping the paired-end.
Thanks.
Romain.
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