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  • super0925
    Senior Member
    • Feb 2014
    • 206

    #1

    Gene ID conversion and Pathway analysis after mosquito blast

    Hi all

    I have got my blast result from mosquito Contigs Fasta format.
    Sth like

    query_name query_length accession_number
    1059N_ae_contig_1 676 XM_001650645
    1059N_ae_contig_5 563 XM_001650988
    1059N_ae_contig_6 2123 XM_001664234


    I want to do the pathway analysis on this genes. However, the GenBank accession number is not suitable for the further analysis.

    (1)Any one knows how to do that ?

    (2)I could transfer the mosquito GenBank accession ID to Vectorbase ID. But I don't know how could I transfer them automatically.

    (3)Or Could I just blast the contigs to human/mouse and get the gene name and then go to GO/pathway analysis? Is it reasonable?

    Thank you!

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