Originally posted by GenoMax
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Thank you for the advise, do you have any recommended handbook/guides/manual/website which teaches some RNA-seq analyses using command lines/softwares?
I would really like to get a bioinformatician who knows about RNA-seq to help, however, no one in my department knows about it. That's why I have been hunting for information online.
It would be easier if all the sequences has been input into Galaxy and IGV, however like what you've said, they only have certain 'model organism' and the rest are not in there. That's why I was thinking of inputting the reference genome (chromosome and plasmid; separately or combined,whichever more appropriate for analyses) myself.
Thank you.
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