Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • novino11
    Junior Member
    • Jun 2011
    • 2

    #1

    makeblastdb error while using repeat masker locally

    Hii
    I installed a local copy of Repeat masker on my system . However when I tried to mask repeated sequences in my genome , I get an error invoking makeblast db- something like this:

    ./RepeatMasker apis2noempty.fa [11:31AM]
    RepeatMasker version open-3.3.0
    Search Engine: NCBI/RMBLAST
    Master RepeatMasker Database: /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/RepeatMaskerLib.embl ( Complete Database: 20110419 )


    Building general libraries in: /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/20110419/general
    RepeatMasker::createLib(): Error invoking /home/chipseq/Naveen/repmasker/rmblast/bin/makeblastdb on file /home/chipseq/Naveen/repmasker/RepeatMasker/Libraries/20110419/general/at.lib.


    Can anyone help me solve this issue
    Thanks
  • ECO
    --Site Admin--
    • Oct 2007
    • 1360

    #2
    Needed this question myself...answer was mostly found here:

    http://biostar.stackexchange.com/que...ng-makeblastdb

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, Yesterday, 11:13 AM
    0 responses
    16 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, Yesterday, 10:48 AM
    0 responses
    15 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    35 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    42 views
    0 reactions
    Last Post SEQadmin2  
    Working...