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  • seq_newbie
    Member
    • Jun 2011
    • 14
    #1

    How to convert BED format to SAM/BAM?

    Hi,

    I require a junctions file in SAM format and I have it in BED format. I was wondering is there a tool to convert BED to SAM or BED to BAM? (and I can then use samtools to complete the conversion from BAM to SAM).

    Regards,

    K.
    Tags: bed, sam
  • poisson200
    Member
    • Feb 2010
    • 63
    #2
    You can try installing BEDTools and using bedToBam

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