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  • dong01
    Junior Member
    • Jun 2011
    • 4

    #1

    SAMtools pileup format

    Hi,

    Does anybody can tell me where I can find the detail explanation of pileup format? by reading the manual from http://samtools.sourceforge.net/pileup.shtml, I still don't understand some symbols such as ^~, ^l, ^k

    --------------------------
    seq1 1 C 1 ^~. <
    seq1 2 A 1 . <
    seq1 3 C 2 .^~. <<
    seq1 4 T 2 .. <<
    seq1 5 A 3 ..^~. <<<
    seq1 6 G 4 ...^`. <<<(
    seq1 7 T 4 .... <<<-
    seq1 8 G 4 .... <<<&
    seq1 9 G 5 ....^~. <<<-<
    seq1 10 C 5 ..... <<<-<
    seq1 11 T 5 ..... <<<-<
    seq1 12 C 5 ..... <<<-<
    seq1 13 A 7 .....^~.^~. <0<,<<<
    seq1 14 T 7 ....... <<<-<<<
    seq1 15 T 8 .......^~. <<<-<<<<
    seq1 16 G 8 ........ ;<7-<<<<
    seq1 17 T 8 ........ <<;-<<<<
    seq1 18 A 9 ........^l, <67)<<;<=
    -------------------------------


    Thanks

    Dong

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