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454 data analysis & Mapping

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  • 454 data analysis & Mapping

    Hi,

    I just got back data on a 454 run (.fna and .qual files) on some PCR amplicons. I am on the look out for a software program that can help me do the data analysis including sequence alignment, mapping of these sequences to a reference sequence/sequences etc. Can someone suggest?

    Thanks,
    JAG

  • #2
    You could start with the Roche 454 GS Amplicon Mapper. It's designed specifically to do exactly what you want on 454 data.

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    • #3
      Thanks Tony,

      I do not have access to the 454 instrument and as such that software. Is there any other easy to use software (trial version) that I can install on my PC and perform the data analysis?

      JAG

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      • #4
        I would get in contact with the sequencing provider and ask for access to the Roche software. That's one of only a few packages I know of which can deal with this problem, the others being commercial software like Clc genomics and perhaps Lasergene.

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