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  • DrDTonge
    Member
    • May 2011
    • 23
    #1

    RNA2MAP (SOLiD)

    Dear all,

    I've currently got a set of small RNA samples on the SOLiD 4 and am wanting to perform some small RNA analysis.

    My samples are canine and therefore I have obtained the cfa.gff file from miRBAse as recommended in the SOLiD RNA2MAP manual.

    My question is how do I ensure I have the correct genomic reference fasta file (also required)? From NCBI I note there are chromosome.fa and chromsome_ref.fa - what is the difference in these please?

    Best wishes,

    D
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