Hi
I am using SomaticSniper to identify single nucleotide positions that are different between tumor and normal. The tools is at http://genome.wustl.edu/software/somaticsniper
It takes a tumor bam and a normal bam and compares the two to determine the differences. It outputs a file in a format very similar to Samtools consensus format.
My question is that if a region is given, how to identify it instead of analyze the entire region?
You know the bam file has a big size.
Thanks
I am using SomaticSniper to identify single nucleotide positions that are different between tumor and normal. The tools is at http://genome.wustl.edu/software/somaticsniper
It takes a tumor bam and a normal bam and compares the two to determine the differences. It outputs a file in a format very similar to Samtools consensus format.
My question is that if a region is given, how to identify it instead of analyze the entire region?
You know the bam file has a big size.
Thanks
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